Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M39 Chr11q_UniqueNum	BreastC_M39 Chr11q_pVal	BreastC_M39 Chr11q_Unique	ColonC_M4 CellCycle SMARCA2-Correlated_UniqueNum	ColonC_M4 CellCycle SMARCA2-Correlated_pVal	ColonC_M4 CellCycle SMARCA2-Correlated_Unique
GSE6090_UNSTIM_VS_DC-SIGN_STIM_DC_UP	0		0.000185579987682	6	0.000368124204086	FOXRED1|PTS|RBM7|TIRAP|TMEM126B|VPS11	27	3.03577127765e-06	ALDH18A1|ANAPC5|BMS1|CDYL|COMMD2|DCTN5|DUSP6|GABPA|GEN1|GPN1|HASPIN|HINT3|HSF2|KPNA1|N6AMT1|ORMDL1|PTPN11|RACGAP1|RWDD2B|RYK|SFXN1|TMED2|TPRKB|TTC27|WDR12|XRCC5|YEATS4
GSE9509_LPS_VS_LPS_AND_IL10_STIM_IL10_KO_MACROPHAGE_10MIN_DN	0		9.96771769408e-05	7	0.00014251854499	DIP2B|FOXRED1|HIKESHI|MRE11|PCSK7|THYN1|TMEM126A	28	5.68358088915e-05	ANAPC16|ATP6V0A2|BCS1L|C2ORF42|C5ORF22|CENPO|CHCHD1|COQ5|DNAJC9|DSCR3|E2F6|FAM120B|GFM2|KIF20A|MRPL18|MRPL42|MSH2|MTO1|NCBP2|NFYA|NUDT5|PRMT2|RNF41|RREB1|TFB1M|UBE4B|VPS29|ZDHHC16
GSE12845_IGD_POS_VS_NEG_BLOOD_BCELL_DN	1	PDIA4	0.000709839306681	5	0.000919268739397	ACAT1|ALG9|DCPS|DLAT|SND1	24	0.000500409873965	AURKB|CAPRIN1|CCNB1|CDK4|GOLPH3|HIBCH|HMGN4|HSP90B1|KRAS|MCM6|MTHFD2|MTX2|NCL|PDIA6|PEBP1|PIGP|PPA1|PREB|RAB1A|RNF34|RRM2|SHCBP1|SPATS2|UBE2J1
GSE13485_DAY1_VS_DAY21_YF17D_VACCINE_PBMC_DN	0		0.000459642145023	6	0.000919268739397	CCDC90B|HIKESHI|REXO2|SDHD|TMEM126A|TMEM126B	35	1.55506483265e-08	ABHD10|CCT4|CEP63|CHCHD1|CISD1|DCUN1D1|DPY30|ECHDC1|ERI2|FH|GTF2H5|HAT1|HSPE1|KLHL12|LMBRD2|MDH1|METTL5|MRPL51|MRPS35|NDUFB3|PARPBP|PRIM1|RECQL|RFC5|RPF2|RPL22|RPP30|RTN4IP1|SGO2|SNRPG|SNX14|TXNDC9|VTA1|YEATS4|ZNF143
GSE22886_NAIVE_CD4_TCELL_VS_48H_ACT_TH2_DN	0		8.10532642884e-05	7	0.000162106334186	AASDHPPT|DCPS|DNAJB4|EED|MRE11|THYN1|TIMM8B	39	1.94390785786e-10	ACTR2|ARL6IP1|ATP2A2|ATP6V1A|CDC7|CDC123|CRIPT|DIABLO|ESPL1|GK3P|GLO1|HJURP|HSPA13|IMMT|KIF1BP|KNTC1|LARP4|MCMBP|MINPP1|MIS18A|MLEC|MRPL35|MTHFD2|NDUFB3|PDSS2|PHTF1|PSMD1|RNF34|RRM2|SMC4|SMC6|STAMBP|STARD7|TMED2|TPI1|TYMS|UNC50|VPS54|ZBTB24
GSE41867_DAY15_EFFECTOR_VS_DAY30_EXHAUSTED_CD8_TCELL_LCMV_CLONE13_DN	0		8.68268530097e-05	7	0.00017268757504	AASDHPPT|ALKBH8|DCUN1D5|PUS3|SLC11A2|STT3A|TMEM126B	32	9.66130979436e-07	ATP13A3|C18ORF54|ECHDC1|GABPA|HIBCH|IRAK1BP1|KIAA1841|LIPT1|MCMBP|MDC1|MTIF2|NDUFS1|NPM3|NUDT5|NUP35|NUS1|ORMDL1|PCMT1|PPIF|PREP|PTER|RAB18|STRAP|TAF5|TBP|THAP4|TMED2|USP16|WDR43|WDR75|ZBTB2|ZNF597
GSE41867_NAIVE_VS_DAY30_LCMV_ARMSTRONG_MEMORY_CD8_TCELL_UP	0		0.0004938968275	6	0.000944886240652	ARFGAP3|COMMD1|DCUN1D5|FDX1|FOXRED1|STT3A	28	4.29074143475e-05	ANAPC7|ANAPC13|ARL6|CDC123|COQ7|CUEDC2|CYP20A1|DPY30|FCER2|GABPA|HINT3|HSPA13|KBTBD4|MCMBP|MINPP1|MTRF1L|NDUFA12|NUP107|ORC3|PDCD2|PDP2|RPAP3|SARNP|SOD1|TMPO|ZC3H15|ZDHHC16|ZNF239
Human HeadandNeck_Jarvinen06_502genes (16715129-SuppTable4)	0		0.000127781932621	16	8.86072893811e-09	ACAT1|ANKRD49|BIRC2|CEP57|DLAT|HIKESHI|NKAPD1|NPAT|PUS3|RPUSD4|SDHD|SIK2|SRPRA|ST14|STT3A|UBE4A	49	0.000255555004514	AIG1|AP3B1|ASCC3|ASF1A|C21ORF59|CAPN7|CBR1|CCNC|CCNT1|CDC7|COPS7A|COX14|DAZAP2|DDX23|DNAJC14|ENPP4|ERI2|GDI2|GLUD1|HMMR|HSPA14|M6PR|MFF|MLF2|MRPS6|MTO1|NCAPD2|NEMP1|NOA1|NOP58|PAK1|PEX3|PHTF1|PREP|PRPF18|PRTFDC1|PUS1|RAB18|RAN|RECQL|RMND1|RPF2|SENP1|SHMT2|SLC38A2|THNSL1|TSFM|WBP11|YBX3
LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN	1	MSANTD4	0.000184321608779	61	9.43983111391e-58	AASDHPPT|ACAD8|ACAT1|ALG9|ALKBH8|ANKRD49|APLP2|ARCN1|BIRC2|BUD13|C11ORF54|CEP57|CEP295|CUL5|CWC15|CWF19L2|DCUN1D5|DDX10|DLAT|DPAGT1|EED|EI24|FAM76B|FDX1|FOXRED1|GLB1L2|HIKESHI|HINFP|HMBS|HYOU1|MED17|MRE11|NFRKB|NKAPD1|NPAT|PANX1|PRDM10|PTS|PUS3|RBM7|RDX|RNF214|RPUSD4|SDHD|SIDT2|SLC37A4|SNX19|SRSF8|STT3A|TAF1D|THYN1|TIMM8B|TMEM123|TMEM126A|TMEM126B|UBE4A|USP28|VPS26B|ZBTB44|ZNF202|ZPR1	73	0.000368643217559	ABRAXAS2|AFDN|ANAPC16|AP3M1|ASCC1|ATAD1|ATE1|BMPR1A|BORCS7|BUB3|C10ORF88|CACUL1|CAPN7|CEP104|CHCHD1|CTBP2|CUEDC2|CUTC|CWF19L1|DDX21|DNAJC9|EDRF1|EEF1AKMT2|EPB41|EXOC6|FANCD2|FBXL15|FRAT1|FRAT2|GHITM|GLUD1|GNB1|GPAM|HIF1AN|HNRNPH3|HNRNPR|INPP5A|KIF1BP|KIF11|KIF15|MARCH5|MINPP1|MKI67|MRPL43|MRPS16|NHLRC2|OAT|PAK1|PCBD1|PCGF6|PLEKHA1|PNRC2|POLR3A|PRDX3|PTEN|PTP4A2|R3HCC1L|RPP30|RSF1|SEC23IP|SHOC2|STAMBPL1|TAF5|TBC1D12|TMEM201|TRUB1|UBE2E1|UBE4B|VAMP3|VPS26A|VTI1A|WAPL|ZMYM6
MOREAUX_B_LYMPHOCYTE_MATURATION_BY_TACI_DN	0		0.000456113787014	4	0.00090141349959	AASDHPPT|CEP295|THYN1|TMEM126A	16	1.08140744377e-05	ASF1A|CCT2|CDK1|CHCHD1|DDX1|EDRF1|MRPL43|NUDT5|PPP1R12A|RACGAP1|RAN|RNF7|SGO2|SLC38A1|TMEM165|TYMS
MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN	0		4.11234198916e-07	9	7.24488228725e-07	AASDHPPT|ANKRD49|C11ORF54|CEP57|CEP295|HIKESHI|SNX19|THYN1|TMEM126A	31	9.79801691079e-08	ACTR6|ASF1A|BUB3|CCT2|CDK1|CHCHD1|DDX1|DDX18|EDRF1|GCSH|IFT57|MCM3AP|MET|MINDY3|MINPP1|MPHOSPH9|MRPL43|NAA50|NNT|NUDT5|PPP1R12A|RACGAP1|RAN|RNF7|RSF1|SGO2|SLC33A1|SLC38A1|SPAST|TMEM165|TYMS
Mouse Viral_Craft08_969genes (18787207-TableS2)	0		5.78592363241e-05	13	0.000115597619594	ARCN1|COMMD1|CUL5|CWC15|CWF19L2|DDX10|FDX1|MED17|NPAT|PUS3|RDX|TAF1D|ZFAND5	77	1.20853054251e-07	AEBP2|ARHGAP12|BRWD1|C1D|CAD|CCDC18|CCNJ|CDC40|CDK17|CEBPZ|CENPW|CEP55|CHAC1|CHUK|CRY1|DCUN1D3|DHFR|DIABLO|DUSP11|ERCC4|EXOC6|FBXO5|FXR1|GADD45A|GIGYF2|GOLPH3|GTPBP4|HDAC4|HMGN5|IRAK1BP1|KRAS|METAP2|MPHOSPH10|MRPS35|MTHFD2|MTIF2|MYNN|NAP1L1|NCL|NCOA4|NDUFB3|PALB2|PDCL3|PNRC2|PPHLN1|PRPF4B|PTGES3|RIF1|RNF41|RPE|SCAF11|SDHAF3|SENP2|SERBP1|SLC19A1|SMC3|SMC4|SRSF10|SSB|STIL|SUV39H2|SYNCRIP|TAF8|TFAM|TMEM39A|TMTC2|TPRKB|TRUB1|UBXN4|UXS1|VTA1|WARS2|WDSUB1|YBX3|YEATS4|ZC3H15|ZFR
Transit peptide	0		0.000415431059108	10	0.000830862118215	ACAD8|ACAT1|CCDC90B|DLAT|FDX1|MRPL16|NLRX1|REXO2|RPUSD4|SDHD	87	2.50245496664e-17	ABHD10|AGPS|ARG2|BCKDHB|C12ORF10|C12ORF65|C21ORF33|COQ3|COQ5|COQ7|COX5B|COX7A2L|CS|DIABLO|FASTKD1|FASTKD2|FH|GCSH|GHITM|GLS2|GLUD1|GLUD2|GPAM|GPD2|HADHA|HADHB|HIBCH|HSPD1|IMMT|LIPT1|LRPPRC|MAIP1|MMAB|MMADHC|MRPL18|MRPL30|MRPL33|MRPL35|MRPL42|MRPL43|MRPL51|MRPS9|MRPS16|MRPS35|MTHFD2|MTIF2|MTO1|MTPAP|MTRF1L|NADK2|NDUFA9|NDUFA10|NDUFB8|NDUFS1|NDUFV3|NFU1|NNT|NUBPL|OAT|OSGEPL1|PDHX|PDP2|PITRM1|PNPT1|PPIF|PRDX3|PTCD3|PUS1|RARS2|RMND1|RTN4IP1|SDHAF3|SDHAF4|SHMT2|SLC8B1|SLC25A3|STARD7|SUCLG1|SUPV3L1|TFAM|TFB1M|TRMT61B|TSFM|TWNK|UQCRFS1|WARS2|YARS2
USF2_Q6	0		4.48807133506e-05	8	8.94862505562e-05	C2CD2L|CEP57|CUL5|DPAGT1|FAM76B|REXO2|RPUSD4|TMEM258	38	2.7517614507e-07	ADK|AFDN|ALDH18A1|AP3M1|ARHGAP12|ATF1|CACUL1|CCAR1|CCDC6|CHRM1|COMMD3|COPS7A|COPZ1|CTBP2|EIF3A|EIF4B|EPB41|HNRNPA1|HNRNPF|HNRNPH3|LTBR|MFSD5|NET1|PA2G4|POLR3A|PPRC1|RPL22|SEC23IP|SERBP1|SFXN2|SLC38A2|SMC3|TIAL1|UBE4B|VPS26A|YBX3|ZFP91|ZMYM6
mitochondrial envelope [GoID:GO:0005740; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		0.000120679278897	13	0.000241358492467	ACAT1|ATP5L|CCDC90B|FOXRED1|MRPL16|NLRX1|REXO2|SDHD|SLC11A2|SNPH|TIMM8B|TMEM126A|TMEM126B	91	6.53274339372e-11	ABCD3|AFG1L|AIFM2|ALDH18A1|ATP5B|ATP5C1|ATP5G3|ATP5J|ATP5O|BCS1L|BLOC1S1|BPHL|CEBPZOS|CHCHD1|CISD1|COQ3|COQ5|COQ7|COX5B|COX7A2L|COX14|DIABLO|DNM1L|DTYMK|GHITM|GK|GK3P|GOLPH3|GPAM|GPD2|HADHA|HADHB|HSPD1|IMMT|MAIP1|MARCH5|MFF|MFN1|MGST1|MRPL18|MRPL30|MRPL33|MRPL35|MRPL39|MRPL42|MRPL43|MRPL51|MRPS5|MRPS6|MRPS9|MRPS10|MRPS16|MRPS35|MTX2|NDUFA9|NDUFA10|NDUFA12|NDUFAF4|NDUFB3|NDUFB8|NDUFS1|NDUFV3|NNT|NOA1|PGAM5|PHB2|PNPT1|PPIF|PPP1CC|PTCD3|RTN4IP1|SDHAF3|SDHAF4|SFXN1|SFXN2|SHMT2|SLC8B1|SLC25A3|SOD1|SORD|STARD7|SUCLG1|TIGAR|TIMM23B|TMBIM6|TRIAP1|TYMS|UQCRFS1|USMG5|VDAC2|YME1L1
mitochondrial membrane [GoID:GO:0031966; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		0.00025876048556	12	0.000517518512133	ACAT1|ATP5L|CCDC90B|FOXRED1|MRPL16|NLRX1|SDHD|SLC11A2|SNPH|TIMM8B|TMEM126A|TMEM126B	83	2.45898700588e-09	ABCD3|AFG1L|AIFM2|ALDH18A1|ATP5B|ATP5C1|ATP5G3|ATP5J|ATP5O|BCS1L|BPHL|CEBPZOS|CHCHD1|CISD1|COQ3|COQ5|COQ7|COX5B|COX7A2L|COX14|DNM1L|GHITM|GK|GK3P|GPAM|GPD2|HADHA|HADHB|HSPD1|IMMT|MAIP1|MARCH5|MFF|MFN1|MGST1|MRPL18|MRPL30|MRPL33|MRPL35|MRPL39|MRPL42|MRPL43|MRPL51|MRPS5|MRPS6|MRPS9|MRPS10|MRPS16|MRPS35|MTX2|NDUFA9|NDUFA10|NDUFA12|NDUFAF4|NDUFB3|NDUFB8|NDUFS1|NDUFV3|NNT|NOA1|PGAM5|PHB2|PPIF|PPP1CC|PTCD3|RTN4IP1|SDHAF4|SFXN1|SFXN2|SHMT2|SLC8B1|SLC25A3|SORD|STARD7|SUCLG1|TIGAR|TIMM23B|TMBIM6|TYMS|UQCRFS1|USMG5|VDAC2|YME1L1
mitochondrial part [GoID:GO:0044429; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		2.25889498482e-05	17	4.51778996964e-05	ACAD8|ACAT1|ATP5L|CCDC90B|DLAT|FDX1|FOXRED1|MRPL16|NLRX1|REXO2|RPUSD4|SDHD|SLC11A2|SNPH|TIMM8B|TMEM126A|TMEM126B	134	5.20025414097e-18	ABCD3|ABHD10|AFG1L|AIFM2|ALDH18A1|ARG2|ATP5B|ATP5C1|ATP5G3|ATP5J|ATP5O|BCKDHB|BCS1L|BLOC1S1|BPHL|C12ORF65|CCNB1|CDK1|CEBPZOS|CHCHD1|CISD1|COQ3|COQ5|COQ7|COX5B|COX7A2L|COX14|CREB1|CS|DIABLO|DNA2|DNM1L|DTYMK|FASTKD2|FH|GCSH|GFM2|GHITM|GK|GK3P|GLS2|GLUD1|GOLPH3|GPAM|GPD2|HADHA|HADHB|HIBCH|HSPD1|HSPE1|HYKK|IMMT|LIPT1|LRPPRC|MAIP1|MARCH5|MFF|MFN1|MGST1|MMAB|MRPL18|MRPL30|MRPL33|MRPL35|MRPL39|MRPL42|MRPL43|MRPL51|MRPS5|MRPS6|MRPS9|MRPS10|MRPS16|MRPS35|MTHFD2|MTRF1L|MTX2|NADK2|NDUFA9|NDUFA10|NDUFA12|NDUFAF4|NDUFB3|NDUFB8|NDUFS1|NDUFV3|NNT|NOA1|NUBPL|OAT|PARG|PDHX|PDP2|PDSS1|PDSS2|PGAM5|PHB2|PITRM1|PNPT1|PPIF|PPP1CC|PRDX3|PTCD3|PUS1|RARS2|RTN4IP1|SDHAF3|SDHAF4|SFXN1|SFXN2|SHMT2|SLC8B1|SLC25A3|SOD1|SORD|STARD7|SUCLG1|SUPV3L1|TFAM|TFB1M|TIGAR|TIMM23B|TMBIM6|TRIAP1|TRMT61B|TSFM|TWNK|TYMS|UQCRFS1|USMG5|VDAC2|WARS2|YARS2|YME1L1
